PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0087s0083.4.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family E2F/DP
Protein Properties Length: 401aa    MW: 44170 Da    PI: 4.4368
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0087s0083.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP86.22.4e-2771136171
              E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                          r+++sL+llt+kf++l++++e+g+++ln++a++L   +v  ++RRiYDi+NVLe+++liekk kn+irwkg
  Kaladp0087s0083.4.p  71 RYDSSLGLLTKKFINLIKHAEDGMLDLNKAAETL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIRWKG 136
                          6899******************************...99..****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-2968138IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.8E-3471136IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.39E-1771134IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023192.1E-2473136IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440743.14E-33149253No hitNo description
CDDcd146607.37E-49149253No hitNo description
PfamPF164211.4E-33152251IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010090Biological Processtrichome morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051302Biological Processregulation of cell division
GO:0051446Biological Processpositive regulation of meiotic cell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MADDNEVASS NWTNSTVYTE VDKSPLKKPV SAKGGRVYNK SKGSKGNKAA AQTPLLTAGS  60
PSALTSAGNC RYDSSLGLLT KKFINLIKHA EDGMLDLNKA AETLEVQKRR IYDITNVLEG  120
IGLIEKKLKN RIRWKGLDVS QPDGVETDVS RLQIDVENLN LEEQNLDDQI RGMQERLRDL  180
SEDENNQKWL FVTEEDIKSL PCFQNETLIA IKAPHGTTLE VPDPDEAANF PQRRYRIVLR  240
STMGPIDVYL VSQFEEKFED LNGAEQSVNC PVASTSRPVE NSGTRVANAQ STENDITGQA  300
QDAHRVPSDT LMNDNGSDDF VGGIMKIVPD VNADTDYWFL SDAELSVTEL WHPESGIGNH  360
LDDMPHHTDY DIGDTSIPQP QTPPSALMDI PSSSVNSTPR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A7e-2471137774PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008243467.10.0PREDICTED: transcription factor E2FA
SwissprotQ9FNY01e-141E2FA_ARATH; Transcription factor E2FA
TrEMBLM5W8E60.0M5W8E6_PRUPE; Uncharacterized protein
STRINGVIT_08s0007g02510.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36010.11e-137E2F transcription factor 3